mh_utils

Utilities for handing ancillary files produced by MassHunter.

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The current utilities are as follows:

• mh_utils.worklist_parser: Parse Agilent MassHunter Worklists (*.wkl files).

• mh_utils.cef_parser: Parse Agilent MassHunter Compound Exchange Format files (*.cef files).

Installation

from PyPIfrom Anacondafrom GitHub

python3 -m pip install mh_utils --user

API Reference

• mh_utils.utils
  • as_path
  • camel_to_snake
  • element_to_bool
  • make_timedelta
  • strip_string
• mh_utils.xml
  • XMLFileMixin
  • get_validated_tree
• mh_utils.cef_parser
  • Compound
  • CompoundList
  • Device
  • Flag
  • LocationDict
  • Molecule
  • parse_cef
  • parse_compound_scores
  • parse_match_scores
  • Peak
  • RTRange
  • Score
  • Spectrum
• mh_utils.worklist_parser
  • read_worklist
  • mh_utils.worklist_parser.classes
    • Attribute
    • Checksum
    • JobData
    • Macro
    • Worklist
  • mh_utils.worklist_parser.columns
    • Column
    • injection_volume
    • columns
  • mh_utils.worklist_parser.enums
    • AttributeType
  • mh_utils.worklist_parser.parser
    • parse_datetime
    • parse_params
    • parse_sample_info
    • sample_info_tags
  • Example Usage
    • Output

Documentation

• Overview
• Coding style
• Automated tests
• Type Annotations
• Build documentation locally
• Downloading source code
  • Building from source

View the Function Index or browse the Source Code.

Browse the GitHub Repository